Crop type and altitude are the main drivers of species composition of arable weed vegetation in Tajikistan

The influence of broad‐scale environmental factors on the species composition of segetal weed communities in Tajikistan was investigated. The research was conducted throughout the country, analysing plots of root crops as well as cereals from all phytogeographical regions of Tajikistan, with the exception of the eastern Pamir. The study was based on 440 phytosociological relevées sampled between 2009 and 2013 and analysed using direct and indirect ordinations. A set of environmental variables was obtained for each plot: altitude, mean annual precipitation, mean annual temperature, pH, crop type, longitude, latitude and date of sampling (seasonality). Crop type was the major factor determining species composition, which was related to the different farming practices in roots and cereals. Major changes in weed species composition were also driven by altitude and correlated temperatures. The seasonality of weed communities also had a considerable effect on weed community structure. Samples from spring differed significantly from samples from summer and late summer. Only longitude and soil pH were found to be insignificant. The complete set of environmental variables used in a canonical correspondence analysis explained 8.3% of the species variation in sampled plots. The study showed that despite the very diverse climatic conditions and low intensity of agriculture in Tajikistan, agrocoenoses respond mainly to the type of cultivation practised in arable land.     

Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus

Molecular (PCR) diagnostic tests for the detection and identification of aquareovirus in general, and Tasmanian Atlantic salmon reovirus (TSRV) specifically, were developed, and their diagnostic sensitivity and specificity were determined and compared with virus isolation in cell culture. Intralaboratory and interlaboratory comparison of PCR (conventional hemi‐nested RT‐PCR & RT‐qPCR) and virus isolation in cell culture using finfish cell lines, CHSE‐214 and EPC, was carried out for the detection and identification of TSRV using field samples of farmed Atlantic salmon Salmo salar, L. from various aquaculture sites around Tasmania. The interlaboratory comparison of diagnostic methods was carried out between two laboratories, AAHL‐CSIRO and DPIPWE‐Tasmania. A total of 144 fish from nine sites (12–33 fish per site) were sampled from two regions of Tasmania (Tamar River estuary in the north and Huon River estuary in the south‐east) during late spring to early summer of 2009, and the data were analysed using different statistical approaches. The prevalence of TSRV ranged from 6% to 22% in both regions. All the diagnostic methods (data from both laboratories) had high specificity, while the estimated sensitivity varied between tests with RT‐qPCR being the most sensitive (95.2%) method followed by virus isolation and then conventional hemi‐nested RT‐PCR.     

A report on the conservation status of segetal weeds in Tajikistan

Intensification of agriculture has significantly diminished the populations of segetal weeds worldwide in recent decades. Remarkable changes to the entire flora and vegetation of man‐made habitats are being observed in agroecosystems. The present study analyses, for the first time, the threat status of segetal weeds in Tajikistan. A group of 871 weed species were evaluated against IUCN criteria. The assessment of threat status revealed that 214 weed taxa have to be regarded as threatened in Tajikistan, including 18 endemic and four subendemic plants. Five species have been classified as extinct, 27 as critically endangered, 27 as endangered, 39 as vulnerable, 34 as near threatened and 44 as in the ‘least concern’ category. For 38 species, the threat level was not possible, due to lack of data. The most threatened group of taxa is related to rice paddy fields. Numerous losses and disappearances were also observed in cereal communities. Percentages of threatened species in different chorological groups amounted to 58% in the Irano–Turanian, 17% in the Pluriregional, 11% in the Mediterranean, 9.5% in the Cosmopolitan and 4% in the Euro–Siberian species group. Assessment of the threatened status of the rich segetal flora of Tajikistan affords the opportunity to raise awareness of the value of this group of species in the country and may be useful in the conservation management of arable habitats. The results show that even though agriculture in Tajikistan is still based on traditional management and manual work, weed control causes a serious threat to its segetal flora.     

Epitheliocystis in fish

Epitheliocystis is a condition affecting the gills and skin of fish, which has been reported from more than 50 freshwater and marine species. It is caused by intracellular Gram-negative bacteria. Mortalities have been associated with epitheliocystis infections in cultured fish. This review provides an update of our current understanding of this condition, including characterization of the pathogen using immunohistochemical and molecular studies. In most fish species the epitheliocystis agent was negative to an antibody specific for chlamydial genus-specific lipopolysaccharide antigen. Recently, four epitheliocystis agents from four different fish species have been characterized using molecular analysis. While they all belong to the order Chlamydiales, in a lineage separate from the Chlamydiaceae, they are distinct organisms and similarity analysis showed that they had highest similarity values with other chlamydia-like bacteria isolated from various sources, including humans or pig. This confirms the high diversity and host specificity of the pathogen. Further molecular analysis should result in an increased understanding of this condition. To date the pathogen has not been cultured, making experimental studies difficult. High stocking densities, presence of nutrients, season, temperature and fish age have been identified as potential risk factors for the manifestation of this condition.     

Preliminary success using hydrogen peroxide to treat Atlantic salmon,Salmo salar L., affected with experimentally induced amoebic gill disease (AGD)

Currently, the only effective and commercially used treatment for amoebic gill disease (AGD) in farmed Tasmanian Atlantic salmon is freshwater bathing. Hydrogen peroxide (H₂O₂), commonly used throughout the aquaculture industry for a range of topical skin and gill infections, was trialled in vitro and in vivo to ascertain its potential as an alternative treatment against AGD. Under in vitro conditions, trophozoites of Neoparamoeba perurans were exposed to three concentrations of H₂O₂ in sea water (500, 1000 and 1500 mg L^?1) over four durations (10, 20, 30 and 60 min) each at two temperatures (12 and 18 °C). Trophozoite viability was assessed immediately post‐exposure and after 24 h. A concentration/duration combination of 1000 mg L^?1 for >10 min demonstrated potent amoebicidal activity. Subsequently, Atlantic salmon mildly affected with experimentally induced AGD were treated with H₂O₂ at 12 and 18 °C for 15 min at 1250 mg L^?1 and their re‐infection rate was compared to freshwater‐treated fish over 21 days. Significant differences in the percentage of filaments affected with hyperplastic lesions (in association with amoebae) and plasma osmolality were noted between treatment groups immediately post‐bath. However, the results were largely equivocal in terms of disease resolution over a 3‐week period following treatment. These data suggest that H₂O₂ treatment in sea water successfully ameliorated a clinically light case of AGD under laboratory conditions.     

Functional response of <Emphasis Type="Italic">Quercus robur</Emphasis> L. to taproot pruning: a 5-year case study

Key message

Quercus robur seedling mass was affected more by planting density than by taproot pruning. Root pruning enhanced stem biomass at the expense of roots in later growth stages. Alteration of biomass allocation due to nursery practices may result in greater susceptibility to injury and death of the seedlings under unfavorable environmental conditions.

Context

Plants adjust their growth and modulate the resource allocation in response to applied treatments and environmental conditions.

Aims

The aim was to examine how taproot pruning in seedlings grown at different densities affected long-term growth of Quercus robur.

Methods

Seedlings, sown as acorns at two planting densities, with or without pruned roots were harvested in the second, fourth, and fifth years of growth. The effect of root pruning on biomass allocation was determined by measuring leaf, stem, and root mass fractions; carbohydrate concentrations in the roots; and C/N ratios. Specific leaf area and root length were also determined to assess morphological adaptations to growth conditions.

Results

Total seedling mass was affected more by planting density than by taproot pruning. After 4 years of growth, root mass fractions were lower and stem mass fractions were greater in seedlings planted at a higher density. Five-year old root-pruned seedlings also had a lower root mass fraction and higher stem mass fractions than unpruned seedlings. Specific root length was not affected by root pruning or planting density.

Conclusion

Decrease of relative root biomass with simultaneous increase of stem biomass may be a long-term consequence of taproot pruning of Q. robur, and the effects may manifest years after the seedling stage.

     

Effects of thermal-time artificial scarification on the germination dynamics of black locust (<Emphasis Type="Italic">Robinia pseudoacacia</Emphasis> L.) seeds

The aim of this study was to determine the efficiency of methods for the artificial scarification of black locust seeds based on the influence of the air and liquid nitrogen temperatures. Three populations were selected for the analyses: a managed tree stand, a selected seed stand and a seed orchard. Samples of 200 seeds (4 × 50) were randomly selected. Before scarification, the seeds were stored at ?70 °C for 24 h. Nine different scarification treatments were evaluated. To calculate the germination capacity and the dynamics of germination, observations were made on days 3, 5, 7, 10 and 14 after treatment. For statistical analyses, we used repeated measures analysis of variance. The obtained results indicated that the highest scarification efficiency for black locust seeds occurred in the treatment in liquid nitrogen and in an air temperature range of 85–90 °C. The provenance of seeds had a significant effect on the dynamics of germination. Thermal methods and the use of liquid nitrogen can be alternatives to the labour intensive methods of cutting the seeds or using measures that require specialised equipment.